PlantTFDB
Plant Transcription Factor Database
v4.0
Previous version: v3.0
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID KN538682.1_FGP028
Organism
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Poales; Poaceae; BOP clade; Oryzoideae; Oryzeae; Oryzinae; Oryza
Family bHLH
Protein Properties Length: 247aa    MW: 26884.5 Da    PI: 5.8206
Description bHLH family protein
Gene Model
Gene Model ID Type Source Coding Sequence
KN538682.1_FGP028genomeBGIView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1HLH30.66.1e-1079127354
                        HHHHHHHHHHHHHHHHHHHHHHCTSCCC...TTS-STCHHHHHHHHHHHHHH CS
                HLH   3 rahnerErrRRdriNsafeeLrellPkaskapskKlsKaeiLekAveYIksL 54 
                        +++  rE+ RRd++N++f eL + l +    +  K +Ka+iL  A++ + +L
  KN538682.1_FGP028  79 TSKASREKIRRDKMNDRFLELGTTLEPG---KPVKSDKAAILSDATRMVIQL 127
                        67889**********************9...99*************988777 PP

Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
SuperFamilySSF474593.14E-1274145IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
PROSITE profilePS5088812.3676127IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
CDDcd000833.54E-877130No hitNo description
PfamPF000101.9E-780127IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
Gene3DG3DSA:4.10.280.104.3E-1280150IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
SMARTSM003536.0E-882133IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
CDDcd146860.00227143174No hitNo description
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0046983Molecular Functionprotein dimerization activity
Sequence ? help Back to Top
Protein Sequence    Length: 247 aa     Download sequence    Send to blast
MSGTPADGGG GGSGDDWFLD CGILEDLPAA ACGAFPWDAS PSCSNPSVEV SSYVNTTSYV  60
LKEPGSNKRV RSGSCGRPTS KASREKIRRD KMNDRFLELG TTLEPGKPVK SDKAAILSDA  120
TRMVIQLRAE AKQLKDTNES LEDKIKELKA EKDELRDEKQ KLKVEKETLE QQVKILTATP  180
AYMPHPTLMP APYPQAPLAP FHHAQGQAAG QKLMMPFVGY PGYPMWQFMP PSEVDTSKDS  240
EACPPVA
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Nucleotide ? help Back to Top
Source Hit ID E-value Description
GenBankCT8308760.0CT830876.1 Oryza sativa (indica cultivar-group) cDNA clone:OSIGCRA103G20, full insert sequence.
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_015649810.11e-175PREDICTED: transcription factor ILR3
SwissprotQ9FH371e-70ILR3_ARATH; Transcription factor ILR3
TrEMBLA0A0E0I7440.0A0A0E0I744_ORYNI; Uncharacterized protein
TrEMBLA2YR230.0A2YR23_ORYSI; Putative uncharacterized protein
STRINGBGIOSGA027691-PA0.0(Oryza sativa Indica Group)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
MonocotsOGMP20233885
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT5G54680.15e-72bHLH family protein